htSeqTools: High-Throughput Sequencing Quality Control, Processing and Visualization

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htSeqTools: High-Throughput Sequencing Quality Control, Processing and Visualization in R.

Bioinformatics. 2011 Dec 22;

Authors: Planet E, Stephan-Otto Attolini C, Reina O, Flores O, Rossell D

Abstract
SUMMARY: We provide a Bioconductor package with quality assessment, processing and visualization tools for high-throughput sequencing data, with emphasis in ChIP-seq and RNA-seq studies. It includes detection of outliers and biases, inefficient immuno-precipitation and overamplification artifacts, de novo identification of read-rich genomic regions and visualization of the location and coverage of genomic region lists. AVAILABILITY: www.bioconductor.org CONTACT: david.rossell@irbbarcelona.org SUPPLEMENTARY INFORMATION: Supplementary data available at Bioinformatics online.


PMID: 22199381 [PubMed - as supplied by publisher]



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